BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB012A02SP1|AL426297
(781 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1072 1497 0.0
>3x_Contig1072
Length = 5702
Score = 1497 bits (755), Expect = 0.0
Identities = 779/783 (99%), Gaps = 3/783 (0%)
Strand = Plus / Minus
Query: 1 gctgtgttctagggtctaactcacgttttgttgtggtggatgtcgtgtcaccatttggcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 gctgtgttctagggtctaactcacgttttgttgtggtggatgtcgtgtcaccatttggcc 766
Query: 61 tttgtgctgttgtcgtgtttttaggggttatcttcggtgatactgagctttgtcgaacag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 tttgtgctgttgtcgtgtttttaggggttatcttcggtgatactgagctttgtcgaacag 706
Query: 121 gttcatgaattggattaatagccggagacgaggccaccttcggtaccgaggattgcaaag 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 705 gttcatgaattggattaatagccggagacgaggccac-ttcggtaccgaggattgcaaag 647
Query: 181 cacgggcggaaaccttgtatggaccaagttctggggggtctttatcccaaactgagccgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 cacgggcggaaaccttgtatggaccaagttctggggggtctttatcccaaactgagccgt 587
Query: 241 taccgaagtttacatcggcgaaaaactggtgagctttaatttgattgatcagcaatcttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 taccgaagtttacatcggcgaaaaactggtgagctttaatttgattgatcagcaatcttc 527
Query: 301 tttctgggtttttaattagaatatttttcaccaaatctctcacagtcattgggaagccag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 tttctgggtttttaattagaatatttttcaccaaatctctcacagtcattgggaagccag 467
Query: 361 cggtaaaagcaaattgaactttcattaccttctggaatgtcaaatattcattgttcgcct 420
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 466 cggtaaaagcaaattgaactttcattaccttctggaatgtcaaaaattcattgttcgcct 407
Query: 421 taaatggcggtttcccggctatcatttgg-aaaagaatgcaaccaaatgcccaaatgtca 479
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 406 taaatggcggtttcccggctatcatttggaaaaagaatgcaaccaaatgcccaaatgtca 347
Query: 480 cacctaaaatcaacgtagttatcattcaacaattctggtgatacatattctgctgtgcca 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 cacctaaaatcaacgtagttatcattcaacaattctggtgatacatattctgctgtgcca 287
Query: 540 acaaaggagttagatcttgtcaacagatcgtacttaaggtcatcctccgaagtactatct 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 acaaaggagttagatcttgtcaacagatcgtacttaaggtcatcctccgaagtactatct 227
Query: 600 agaagccttgcagtaccaaaatcagttaacttgactttcatatcaacgtctaacaagata 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 agaagccttgcagtaccaaaatcagttaacttgactttcatatcaacgtctaacaagata 167
Query: 660 ttttctggtttcaagtctctatgt-ataactcccttgtcatgcatgaaacctaatgcatc 718
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 166 ttttctggtttcaagtctctatgtaataactcccttgtcatgcatgaaacctaatgcatc 107
Query: 719 gattatttgtgctgcatagtactgtgtacatttttcattgactgaaccatgctttctcat 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 gattatttgtgctgcatagtactgtgtacatttttcattgactgaaccatgctttctcat 47
Query: 779 aag 781
|||
Sbjct: 46 aag 44
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5310
Number of Sequences: 1807
Number of extensions: 5310
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 781
length of database: 10,358,551
effective HSP length: 16
effective length of query: 765
effective length of database: 10,329,639
effective search space: 7902173835
effective search space used: 7902173835
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)